TRAABA24 Preclinical Results

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Abstract

Background:
Pseudomyxoma peritonei (PMP) is a rare malignancy with limited treatment options. Mitomycin C (MMC) is a frontline chemotherapeutic used in hyperthermic intraperitoneal chemotherapy (HIPEC) due to its potent cytotoxicity via DNA cross-linking. However, its severe systemic toxicity restricts use to localized administration. TRAABA24, a lipid nanoparticle (LNP) formulation, was developed as a safer alternative with a distinct mechanism of action, offering sustained efficacy and improved tolerability. This study evaluates TRAABA24’s effects on PMP cell viability, its mechanism of action, and therapeutic potential.

Methods:
PMP cells were treated with TRAABA24 LNP, MMC, and doxorubicin. Cell viability was assessed at 24 and 48 hours using the Promega CellTiter-Glo 3D assay, and ED50 values were calculated using a three-parameter log-logistic model. To evaluate safety, cytotoxicity assays were also conducted in HIEC-6 normal intestinal epithelial cells (1×10⁴ cells/well) under identical conditions. A cAMP quantification assay was performed to validate TRAABA24’s interaction with Gs alpha signaling.

Results:
At 24 hours MMC exhibited the highest cytotoxicity in PMP cells (ED50: 17.4 µM), reducing viability more rapidly than TRAABA24 (ED50: 22.7 µM). However, by 48 hours, TRAABA24 achieved comparable cytotoxicity, suggesting a delayed but sustained effect. MMC induced rapid apoptosis via DNA cross-linking, whereas TRAABA24 triggered an autophagic response, enabling a controlled and tolerable therapeutic effect suitable for systemic administration and sustained oral maintenance therapy. To assess TRAABA24’s selectivity and safety cytotoxicity was evaluated in HIEC-6 normal intestinal epithelial cells. The ED50 values were 221 µM for MMC, 162 µM for Doxorubicin, and 509 µM for TRAABA24, indicating that TRAABA24 exhibited significantly lower toxicity in normal cells compared to MMC and Doxorubicin. 

TRAABA24 was identified through in silico screening for its high binding affinity to the Gs alpha subunit, particularly in the GNAS 201C mutant crystal structure (PDB: 6AU6). Additionally, TRAABA24 binds to tubulin monomers, tubulin dimers, and taxol binding sites A and B, suggesting a role in microtubule dynamics. GNAS mutations cause constitutive Gs alpha activation, leading to elevated cAMP levels, disrupted cellular signaling, and uncontrolled mucin secretion in PMP. A cAMP quantification assay confirmed TRAABA24’s ability to modulate cAMP signaling, reinforcing its distinct mechanism compared to MMC and Doxorubicin.

PMP cancer cell viability - 24hr treatment

1×10⁵ PMP cells/well were cultured in 24-well plates for 24 hours (2% FBS, Gibco OptiMEM GlutaMAX). Pre-treated media was added and incubated with gentle shaking for an additional 24 hours. Treatment media was then exchanged with PBS, cells were imaged, and ATP from viable cells was quantified using the Promega CellTiter-Glo 3D assay. A three-parameter log-logistic model was fitted, and the predicted ED50 was calculated using the R drc library.

PMP cancer cell cAMP

3×10⁴ PMP cells/well were cultured in 96 well plates for 24hr (2% FBS, Gibco OptiMEM GlutaMAX). Pre-treated serum-free induction media with phosphodiesterase inhibitors was added and incubated with gentle shaking for 30 minutes. cAMP production was quantified using the Promega cAMP-Glo assay and a cAMP standard curve.

PMP Cells
No Treatment Control

MMC Treated
ED50 – 17.4uM

TRAABA24 Treated
ED50 – 22.7uM

Doxorubicin Treated
ED50 – 24.1uM

HIEC-6 normal cell viability - 24hr treatment

1×10⁴ HIEC-6 cells/well were cultured in 96 well plates for 48hr (5% FBS, Gibco OptiMEM GlutaMAX, 20ng/ml EGF). 2% FBS pre-treated media was added and incubated with gentle shaking for an additonal 24hr. Treatment media was then exchanged with PBS, cells are imaged and ATP from viable cells quantified using CellTiter-Glo 3D. A 3-parameter log-logistic model is fit and predicted ED50 calculated using the R drc library

HIEC-6 No Treatment Control

HIEC-6 is a human intestinal epithelial cell line commonly used in research to model the small intestine’s barrier function. It closely mimics normal intestinal epithelial behavior, making it valuable for studying drug absorption, cell proliferation, and the effects of various compounds on the gut lining. As a controlled model system, HIEC-6 enables researchers to investigate gastrointestinal processes without direct human experimentation.

MMC Treated HIEC6
ED50 – 221uM

TRAABA Treated HIEC6
ED50 – 509uM

Doxorubicin Treated HIEC6
ED50 – 162uM

Conclusion

While MMC is the most potent short-term cytotoxic agent, its restriction to HIPEC and poor systemic tolerability limit options for recurrent PMP patients who need effective yet tolerable treatments. In contrast, TRAABA24 balances efficacy with tolerability, achieving comparable cytotoxicity over time. Its modulation of Gs alpha signaling and cAMP levels supports its potential as a long-term oral therapy. While MMC induces rapid apoptosis via DNA cross-linking, TRAABA24 enables controlled, sustained cytotoxicity through autophagy, making it suitable for systemic administration and maintenance therapy.